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58 lines
3.0 KiB
YAML
58 lines
3.0 KiB
YAML
- name: plasmidid
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command: nextflow run ./tests/software/plasmidid -entry test_plasmidid -c tests/config/nextflow.config
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tags:
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- plasmidid
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files:
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- path: output/plasmidid/test/data/database_reconstruct_test.length
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md5sum: a57c401f27ae5133823fb09fb21c8a3c
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- path: output/plasmidid/test/data/test.coverage_adapted_clustered_ac
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md5sum: 3a9ea6d336e113a74d7fdca5e7b623fc
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- path: output/plasmidid/test/data/test.err
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md5sum: 011108fd8b0bb4a4c0b5b2cf46452a90
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- path: output/plasmidid/test/data/test.fna
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md5sum: 503a5e1d4654bb2df19420e211070db3
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- path: output/plasmidid/test/data/test.gbk
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md5sum: c851bba9da6ec72cce591617067df50b
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- path: output/plasmidid/test/data/test.gff
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md5sum: 3ed8912ee9b0712ca491fa78ff5f4da1
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- path: output/plasmidid/test/data/test.karyotype_individual.txt
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md5sum: aaf0f5bfe297fb9846ace761ff018d22
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- path: output/plasmidid/test/data/test.karyotype_summary.txt
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md5sum: aaf0f5bfe297fb9846ace761ff018d22
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- path: output/plasmidid/test/data/test.plasmids.blast
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md5sum: 241045ea62156c1ca9bc1eb734ac9526
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- path: output/plasmidid/test/data/test.plasmids.blast.links
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md5sum: a44d6aa388b582da8ad53c5b49467b8f
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- path: output/plasmidid/test/data/test.plasmids.complete
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md5sum: fbc7235285dbb963b07561dd6972a883
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- path: output/plasmidid/test/database/test.fna
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md5sum: 6b843fe652b4369addb382f61952c3dd
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- path: output/plasmidid/test/database/test.gbk
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md5sum: 1f7972ecbb868823727157d2c482700d
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- path: output/plasmidid/test/database/test.gff
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md5sum: 7e65da147d0a413020b0d92b7b03ffcd
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- path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta
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md5sum: 8a8537dd3b21e6905f9367b51c3b3074
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- path: output/plasmidid/test/images/test_individual.circos.conf
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md5sum: f74467ab77232e2b342e2bd408897b12
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- path: output/plasmidid/test/images/test_MT192765.1_individual.circos.conf
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md5sum: 548443ba0a68065a69383fe32b226780
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- path: output/plasmidid/test/images/test_summary.circos.conf
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md5sum: e59dc3b77ee610a48b79230da705aba0
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- path: output/plasmidid/test/images/test_MT192765.1.png
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- path: output/plasmidid/test/images/test_summary.png
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- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.clusters.tab
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md5sum: cf75e4418631796bb4675129b575915d
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- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta
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md5sum: 483f4a5dfe60171c86ee9b7e6dff908b
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- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta.blast.tmp.ndb
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md5sum: f67f8be1e00eb7d3512869071fb4c2c2
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- path: output/plasmidid/test/kmer/database.filtered_0.8_term.fasta
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md5sum: c7fe0e9e9a94d98d7f85a7be99c032fd
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- path: output/plasmidid/test/kmer/database.filtered_0.8_term.mash.distances.tab
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md5sum: fd5408c3c2f8f68dc01e0123bb6a9079
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- path: output/plasmidid/test/logs/draw_circos_images.log
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- path: output/plasmidid/test/logs/plasmidID.log
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- path: output/plasmidid/test/test_final_results.html
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- path: output/plasmidid/test/test_final_results.tab
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