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55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: busco
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description: Benchmarking Universal Single Copy Orthologs
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keywords:
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- quality control
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- genome
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- transcriptome
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- proteome
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tools:
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- busco:
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description: BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.
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homepage: https://busco.ezlab.org/
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documentation: https://busco.ezlab.org/busco_userguide.html
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tool_dev_url: https://gitlab.com/ezlab/busco
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doi: "10.1007/978-1-4939-9173-0_14"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Nucleic or amino acid sequence file in FASTA format.
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pattern: "*.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz}"
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- lineage:
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type: value
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description: The BUSCO lineage to use.
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- busco_lineages_path:
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type: directory
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description: Path to local BUSCO lineages directory.
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- config_file:
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type: directory
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description: Path to BUSCO config file.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- busco_dir:
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type: directory
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description: BUSCO lineage specific output
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pattern: "*-busco"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@priyanka-surana"
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- "@charles-plessy"
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- "@mahesh-panchal"
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