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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: mashtree
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description: Quickly create a tree using Mash distances
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keywords:
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- tree
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- mash
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- fasta
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- fastq
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tools:
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- mashtree:
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description: Create a tree using Mash distances
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homepage: https://github.com/lskatz/mashtree
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documentation: https://github.com/lskatz/mashtree
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tool_dev_url: https://github.com/lskatz/mashtree
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doi: "https://doi.org/10.21105/joss.01762"
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- seqs:
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type: file
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description: FASTA, FASTQ, GenBank, or Mash sketch files
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pattern: "*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tree:
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type: file
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description: A Newick formatted tree file
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pattern: "*.{dnd}"
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- matrix:
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type: file
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description: A TSV matrix of pair-wise Mash distances
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pattern: "*.{tsv}"
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authors:
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- "@rpetit3"
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