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aa97b1be3e
* create transdecoder/longorf module * module transdecoder * main.nf * transdecoder/longorf ready to PR * review comments update * transdecoder/predict module create * test transdecoder/predict module * fix pytest * pytest passed * removed whitespace * Update meta.yml * Update meta.yml Co-authored-by: Danilo Di Leo <danilo.dileo@lnu.se> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
18 lines
542 B
Text
18 lines
542 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TRANSDECODER_PREDICT } from '../../../../modules/transdecoder/predict/main.nf'
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include { TRANSDECODER_LONGORF } from '../../../../modules/transdecoder/longorf/main.nf'
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workflow test_transdecoder_predict {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)]
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TRANSDECODER_LONGORF ( input )
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TRANSDECODER_PREDICT ( input, TRANSDECODER_LONGORF.out.folder )
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}
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