mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
7d98bf1d7d
* add mashtree module * remove todo * whitespace adjustment * remove un-reproducible md5sum * Update main.nf * Update main.nf * Update meta.yml * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: mashtree
|
|
description: Quickly create a tree using Mash distances
|
|
keywords:
|
|
- tree
|
|
- mash
|
|
- fasta
|
|
- fastq
|
|
tools:
|
|
- mashtree:
|
|
description: Create a tree using Mash distances
|
|
homepage: https://github.com/lskatz/mashtree
|
|
documentation: https://github.com/lskatz/mashtree
|
|
tool_dev_url: https://github.com/lskatz/mashtree
|
|
doi: "https://doi.org/10.21105/joss.01762"
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- seqs:
|
|
type: file
|
|
description: FASTA, FASTQ, GenBank, or Mash sketch files
|
|
pattern: "*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tree:
|
|
type: file
|
|
description: A Newick formatted tree file
|
|
pattern: "*.{dnd}"
|
|
- matrix:
|
|
type: file
|
|
description: A TSV matrix of pair-wise Mash distances
|
|
pattern: "*.{tsv}"
|
|
|
|
authors:
|
|
- "@rpetit3"
|