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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: nanolyse
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description: DNA contaminant removal using NanoLyse
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keywords:
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- contaminant_removal
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tools:
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- nanolyse:
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description: |
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DNA contaminant removal using NanoLyse
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homepage: https://github.com/wdecoster/nanolyse
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documentation: https://github.com/wdecoster/nanolyse#nanolyse
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: |
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Basecalled reads in FASTQ.GZ format
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pattern: "*.fastq.gz"
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- fasta:
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type: file
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description: |
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A reference fasta file against which to filter.
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: Reads with contaminants removed in FASTQ format
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pattern: "*.fastq.gz"
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- log:
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type: file
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description: Log of the Nanolyse run.
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pattern: "*.log"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@yuukiiwa"
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