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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: pycoqc
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description: write your description here
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keywords:
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- qc
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- quality control
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- sequencing
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- nanopore
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tools:
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- pycoqc:
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description: PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
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homepage: https://github.com/tleonardi/pycoQC
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documentation: https://tleonardi.github.io/pycoQC/
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tool_dev_url: https://github.com/tleonardi/pycoQC
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doi: "10.21105/joss.01236"
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licence: ['GNU General Public v3 (GPL v3)']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- summary:
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type: file
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description: sequencing summary file
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pattern: "*.{txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- html:
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type: file
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description: Results in HTML format
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- json:
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type: file
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description: Results in JSON format
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pattern: "*.{json}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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