nf-core_modules/modules/bcl2fastq/Dockerfile
Matthias De Smet 9294259eea
Module/bcl2fastq (#1883)
* add bcl2fastq

* test fixes

* fixed tests

* add tests to workflow

* change container source
2022-07-14 13:18:21 +02:00

17 lines
686 B
Docker

# Dockerfile to create container with bcl2fastq
# Push to nfcore/bcl2fastq:<VER>
FROM debian:bullseye-slim
LABEL authors="Matthias De Smet <matthias.desmet@ugent.be>" \
description="Docker image containing bcl2fastq"
# Disclaimer: this container is not provided nor supported by Illumina
# 'ps' command is needed by some nextflow executions to collect system stats
# Install procps and clean apt cache
RUN apt-get update \
&& apt-get install -y \
procps \
&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
# Link hostname cmd to fix hardcoded path
RUN ln -s /bin/hostname /usr/bin/hostname
COPY bcl2fastq /usr/local/bin/bcl2fastq
RUN chmod +x /usr/local/bin/bcl2fastq