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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
888 B
YAML
34 lines
888 B
YAML
name: pangolin
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description: Phylogenetic Assignment of Named Global Outbreak LINeages
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keywords:
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- covid
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- pangolin
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- lineage
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tools:
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- star:
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description: |
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Phylogenetic Assignment of Named Global Outbreak LINeages
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homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
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manual: https://github.com/cov-lineages/pangolin#pangolearn-description
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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- fasta:
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type: file
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description: |
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The genome assembly to be evaluated
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output:
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- report:
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type: file
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description: Pangolin lineage report
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pattern: "*.{csv}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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