mirror of
https://github.com/MillironX/nf-core_modules.git
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c189835b1b
* add drafty controlfreec * get sofatware version * use maps in map * update paths to new and soon-to-be merged test files, add more input docu * Stab at documenting args map * Update syntax * Bit more description * Make the linter happy * tests pass locally * Add outputs & docu * tests are failing locally now :/ but cpn file can also be added * All tests passing, need to update test data again to add folder * Clean up files * Clean up files * Clean up files * Don't know how to get the test to run with the direcotry for now. they pass locally though * Make linter happy * Name process back * Update to use tar folder * fix the checksum
22 lines
1 KiB
YAML
22 lines
1 KiB
YAML
- name: controlfreec test_controlfreec
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command: nextflow run tests/modules/controlfreec -entry test_controlfreec -c tests/config/nextflow.config
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tags:
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- controlfreec
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files:
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- path: output/controlfreec/config.txt
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- path: output/controlfreec/test.mpileup.gz_control.cpn
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md5sum: 1768b571677c418560e5a8fe203bdc79
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- path: output/controlfreec/test2.mpileup.gz_BAF.txt
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md5sum: 3bb7437001cf061a77eaf87b8558c48d
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- path: output/controlfreec/test2.mpileup.gz_CNVs
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md5sum: 1f4f5834dbd1490afdb22f6d3091c4c9
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- path: output/controlfreec/test2.mpileup.gz_info.txt
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md5sum: 1a3055d35028525ccc9e693cc9f335e0
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- path: output/controlfreec/test2.mpileup.gz_ratio.BedGraph
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md5sum: 8ba455b232be20cdcc5bf1e4035e8032
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- path: output/controlfreec/test2.mpileup.gz_ratio.txt
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md5sum: b76b2434de710325069e37fb1e132760
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- path: output/controlfreec/test2.mpileup.gz_sample.cpn
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md5sum: c80dad58a77b1d7ba6d273999f4b4b4b
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- path: output/controlfreec/versions.yml
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md5sum: ff93f6466d4686aab708425782c6c848
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