nf-core_modules/tests/software/picard/markduplicates/test.yml
2021-02-03 16:44:56 +00:00

17 lines
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YAML

- name: picard markduplicates on sorted bam
command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
tags:
- picard
- picard_markduplicates
files:
- path: output/picard/test.MarkDuplicates.metrics.txt
- path: output/picard/test.bam
md5sum: 0ed0bfc94069380334ccd595f6d8207c
- name: picard markduplicates on unsorted bam
command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
tags:
- picard
- picard_markduplicates
- should fail
exit_code: 1