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72e81d6e90
* Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
58 lines
2.1 KiB
YAML
58 lines
2.1 KiB
YAML
- name: spades single end
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command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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- spades_single_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: f15ad4a198324de37c6010dafb3fe781
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- path: output/spades/test.contigs.fa
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md5sum: bc21771042b465c26dfc85beedc33d58
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- path: output/spades/test.scaffolds.fa
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md5sum: bc21771042b465c26dfc85beedc33d58
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: spades paired end
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command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
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tags:
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- spades
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- spades_paired_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: 5da5b04c6fce549c77a209034a9c1e72
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- path: output/spades/test.contigs.fa
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md5sum: 403b612d52edf390f662ab601873f09f
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- path: output/spades/test.scaffolds.fa
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md5sum: 49a9cbb29cee4d088e05e62eb4bc77c4
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: coronaspades single end
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command: nextflow run ./tests/software/spades -entry test_coronospades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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- coronaspades_single_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: 46531ec9b845c1a1cb469627688fecb7
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- path: output/spades/test.contigs.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.scaffolds.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.spades.log
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- name: coronaspades paired end
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command: nextflow run ./tests/software/spades -entry test_coronospades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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- coronaspades_paired_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: 46531ec9b845c1a1cb469627688fecb7
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- path: output/spades/test.contigs.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.scaffolds.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.spades.log
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