mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: fgbio_callmolecularconsensusreads
|
|
description: Calls consensus sequences from reads with the same unique molecular tag.
|
|
|
|
keywords:
|
|
- UMIs
|
|
- consensus sequence
|
|
- bam
|
|
- sam
|
|
tools:
|
|
- fgbio:
|
|
description: Tools for working with genomic and high throughput sequencing data.
|
|
homepage: https://github.com/fulcrumgenomics/fgbio
|
|
documentation: http://fulcrumgenomics.github.io/fgbio/
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false, collapse:false ]
|
|
- bam:
|
|
type: file
|
|
description: |
|
|
The input SAM or BAM file.
|
|
pattern: "*.{bam,sam}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: |
|
|
Output SAM or BAM file to write consensus reads.
|
|
pattern: "*.{bam,sam}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@sruthipsuresh"
|