nf-core_modules/tests/modules/gatk4/combinegvcfs/test.yml
Sateesh a25423dbb9
Gatk4 combinegvcfs (#1342)
* add gatk4/combinegvcfs module

* update gatk4/combinegvcfs

* loop to create a string adding -V to each vcf file

* add contains for variable md5

* rm whitespace

* meta in output

* fix indentations

* fix indentations

* move tmpdir to args and update conda version

Co-authored-by: Peri <rrx8@cdc.gov>
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
2022-02-23 16:29:29 +01:00

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YAML

- name: gatk4 combinegvcfs test_gatk4_combinegvcfs
command: nextflow run tests/modules/gatk4/combinegvcfs -entry test_gatk4_combinegvcfs -c tests/config/nextflow.config
tags:
- gatk4
- gatk4/combinegvcfs
files:
- path: output/gatk4/test.combined.g.vcf.gz
contains: ['VCFv4.2']
- path: output/gatk4/versions.yml
md5sum: 49d9c467f84b6a99a4da3ef161af26bd