nf-core_modules/deprecated/fastq_screen/meta.yml
2020-08-05 16:09:25 +01:00

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YAML

name: FastQ Screen
description: Run FastQ Screen on sequenced reads for Species Identification
keywords:
- Quality Control
- Species Screen
- Contamination
tools:
- fastqc:
description: |
FastQ Screen allows you to screen a library of sequences in
FastQ format against a set of sequence databases so you can
see if the composition of the library matches with what you expect.
homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
input:
-
- sample_id:
type: string
description: Sample identifier
- reads:
type: file
description: Input FastQ file
output:
-
- report:
type: file
description: FastQ Screen report
pattern: "*_screen.{txt,html,png}"
optional_pattern: "*_screen.bisulfite_orientation.png"
authors:
- "@FelixKrueger"