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34 lines
953 B
Text
34 lines
953 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SRATOOLS_PREFETCH } from '../../../../modules/sratools/prefetch/main.nf'
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workflow test_sratools_prefetch_with_settings_input {
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file(params.settings_path).mkdirs()
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def settings = file(params.settings_file)
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settings.text = "/LIBS/GUID = \"5b0d4b7d-88c7-4802-98fd-e3afd06feb32\"\n/libs/cloud/report_instance_identity = \"true\"\n"
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input = [
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[ id:'test', single_end:false ], // meta map
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'DRR000774'
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]
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SRATOOLS_PREFETCH(input, settings)
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}
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workflow test_sratools_prefetch_without_settings_input {
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file(params.settings_path).mkdirs()
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def settings = file(params.settings_file)
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settings.text = "/LIBS/GUID = \"5b0d4b7d-88c7-4802-98fd-e3afd06feb32\"\n/libs/cloud/report_instance_identity = \"true\"\n"
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input = [
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[ id:'test', single_end:false ], // meta map
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'DRR000774'
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]
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SRATOOLS_PREFETCH(input, file('EXISTS'))
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}
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