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14 lines
621 B
Text
14 lines
621 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ALLELECOUNTER } from '../../../software/allelecounter/main.nf' addParams( options: [:] )
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workflow test_allelecounter {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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]
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positions = [ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true) ]
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ALLELECOUNTER ( input, positions )
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}
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