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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
37 lines
997 B
YAML
37 lines
997 B
YAML
name: rseqc_bamstat
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description: Generate statistics from a bam file
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keywords:
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- bam
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- qc
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- bamstat
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tools:
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- rseqc:
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description: |
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RSeQC package provides a number of useful modules that can comprehensively evaluate
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high throughput sequence data especially RNA-seq data.
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homepage: http://rseqc.sourceforge.net/
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documentation: http://rseqc.sourceforge.net/
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doi: 10.1093/bioinformatics/bts356
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: the bam file to calculate statistics of
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pattern: "*.{bam}"
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output:
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- txt:
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type: file
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description: bam statistics report
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pattern: "*.bam_stat.txt"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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