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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
18 lines
637 B
YAML
18 lines
637 B
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr
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command: nextflow run tests/software/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: 139a5ffc7601ce3cfa7a896cd381542a
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- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
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command: nextflow run tests/software/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr/intervals
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: 5b1f6fa2525124c281f71e5a76d28482
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