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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
19 lines
707 B
YAML
19 lines
707 B
YAML
- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
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command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config
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tags:
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- gatk4_fastqtosam_single_end
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- gatk4/fastqtosam
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- gatk4
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
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command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config
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tags:
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- gatk4_fastqtosam_paired_end
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- gatk4
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- gatk4/fastqtosam
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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