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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
17 lines
657 B
YAML
17 lines
657 B
YAML
- name: picard markduplicates on sorted bam
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command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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- path: ./output/picard/test.bam
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md5sum: fe8ed25b4bd25be0cc7a8730fc3b2f30
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- name: picard markduplicates on unsorted bam
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command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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- should fail
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exit_code: 1
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