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a066456735
* NGSCheckMate v1 * Add some tests for UMItools * Added tests for dedup * Include pytest * Delete main.nf * Delete meta.yml * Delete main.nf * Delete nextflow.config * Delete test.yml * add prettier * Add direct test on bam * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/config/pytest_modules.yml Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Not ignore-umi Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
27 lines
1 KiB
YAML
27 lines
1 KiB
YAML
- name: umitools extract test_umitools_extract_single_end
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command: nextflow run tests/modules/umitools/extract -entry test_umitools_extract_single_end -c tests/config/nextflow.config
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tags:
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- umitools/extract
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- umitools
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files:
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- path: output/umitools/test.umi_extract.fastq.gz
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should_exist: true
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- path: output/umitools/test.umi_extract.log
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contains: ["job finished in"]
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- path: output/umitools/versions.yml
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md5sum: 397e6972343f9d7b8eae387fc18c12c7
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- name: umitools extract test_umitools_extract_paired_end
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command: nextflow run tests/modules/umitools/extract -entry test_umitools_extract_paired_end -c tests/config/nextflow.config
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tags:
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- umitools/extract
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- umitools
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files:
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- path: output/umitools/test.umi_extract.log
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contains: ["job finished in"]
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- path: output/umitools/test.umi_extract_1.fastq.gz
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should_exist: true
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- path: output/umitools/test.umi_extract_2.fastq.gz
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should_exist: true
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- path: output/umitools/versions.yml
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md5sum: 0aec6f919d62b7b79f6d0c5d79411464
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