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50 lines
1.3 KiB
YAML
50 lines
1.3 KiB
YAML
name: "whamg"
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description: The wham suite consists of two programs, wham and whamg. wham, the original tool, is a very sensitive method with a high false discovery rate. The second program, whamg, is more accurate and better suited for general structural variant (SV) discovery.
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keywords:
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- whamg
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- wham
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- vcf
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- bam
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- variant calling
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tools:
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- "whamg":
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description: "Structural variant detection and association testing"
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homepage: "https://github.com/zeeev/wham"
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documentation: "https://github.com/zeeev/wham"
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tool_dev_url: "https://github.com/zeeev/wham"
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doi: "https://doi.org/10.1371/journal.pcbi.1004572"
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/SAM file
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pattern: "*.{bam,sam}"
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- bai:
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type: file
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description: BAM index file
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pattern: "*.bai"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Compressed VCF file
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pattern: "*.vcf.gz"
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authors:
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- "@nvnieuwk"
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