nf-core_modules/tools/fastqc/test/main.nf
2019-12-06 10:15:49 +01:00

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#!/usr/bin/env nextflow
nextflow.preview.dsl = 2
include '../../../nf-core/module_testing/check_process_outputs.nf' params(params)
include '../main.nf' params(params)
// Define input channels
readPaths = [
['SRR4238351', ['../../../test-datasets/tools/fastqc/input/SRR4238351_subsamp.fastq.gz']],
['SRR4238355', ['../../../test-datasets/tools/fastqc/input/SRR4238355_subsamp.fastq.gz']],
['SRR4238359', ['../../../test-datasets/tools/fastqc/input/SRR4238359_subsamp.fastq.gz']],
['SRR4238379', ['../../../test-datasets/tools/fastqc/input/SRR4238379_subsamp.fastq.gz']]
]
Channel
.from(readPaths)
.map { row -> [ row[0], [ file(row[1][0]) ] ] }
.set { ch_read_files }
// Run the workflow
workflow {
fastqc(ch_read_files)
// .check_output()
}