nf-core_modules/tools/samtools/index/meta.yml
2020-01-21 11:25:13 +01:00

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YAML

name: samtools index
description: index a BAM or CRAM file
keywords:
- index
tools:
- samtools:
description: |
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
homepage: http://www.htslib.org/
documentation: hhttp://www.htslib.org/doc/samtools.html
doi: 10.1093/bioinformatics/btp352
input:
-
- input:
type: file
description: Input BAM or CRAM file
pattern: *.{bam,cram}
output:
-
- index:
type: file
description: BAM or CRAM index file
pattern: *.{bai}
authors:
- @ewels