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a6ca2b006b
* add software/cooler * fix the wrong files uploaded. * create a branch for cooler/merge * remove the bin_size from metadata. * update the test_data to test-datasets * update pytest_modules.yml * update the test file from single input file to two input file. update the output file from hdf5 to bedpe. * update the version.txt to version.yml and functions.nf * change version.yml to versions * update the test file path and fix the output versions. * Update meta.yml Correct "version" to "versions" * Update main.nf Fix typo * Update main.nf Remove some spaces Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
16 lines
604 B
Text
16 lines
604 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { COOLER_MERGE } from '../../../../modules/cooler/merge/main.nf' addParams( options: [publish_files:[:]] )
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include { COOLER_DUMP } from '../../../../modules/cooler/dump/main.nf' addParams( options: [:] )
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workflow test_cooler_merge {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['generic']['cooler']['test_merge_cool'], checkIfExists: true),
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file(params.test_data['generic']['cooler']['test_merge_cool_cp2'], checkIfExists: true)]
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]
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COOLER_MERGE ( input ).cool | COOLER_DUMP
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}
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