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https://github.com/MillironX/nf-core_modules.git
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f112e4d701
* New module added bamcmp Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>
27 lines
498 B
Text
27 lines
498 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: BWA_MEM {
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ext.prefix = "human"
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}
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withName: BWA_MEM_COV2 {
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ext.prefix = "cov2"
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}
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withName: SAMTOOLS_SORT {
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ext.args = '-n'
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ext.prefix = "sorted"
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}
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withName: SAMTOOLS_SORT_COV2 {
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ext.args = '-n'
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ext.prefix = "sorted_cov2"
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}
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withName: BAMCMP {
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ext.args = '-s "as"'
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}
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}
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