nf-core_modules/modules/malt/build/meta.yml
James A. Fellows Yates be8d7b3293
Update MALT to older version due to major bug in most recent version (#1796)
* Rollback version

* Start work rollback to 0.4.1

* Further changes

* Re do dynamic flag creation

* Prettier.
2022-06-20 08:20:22 +02:00

59 lines
1.8 KiB
YAML

name: malt_build
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
keywords:
- malt
- alignment
- metagenomics
- ancient DNA
- aDNA
- palaeogenomics
- archaeogenomics
- microbiome
- database
tools:
- malt:
description: A tool for mapping metagenomic data
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
tool_dev_url: None
doi: "10.1038/s41559-017-0446-6"
licence: ["GPL v3"]
input:
- fastas:
type: file
description: Directory of, or list of FASTA reference files for indexing
pattern: "*/|*.fasta"
- seq_type:
type: string
description: Type of input data
pattern: "DNA|Protein"
- mapping_file:
type: file
description: An unzipped MEGAN mapping file in .abin format (pre-2020), downloadable from https://software-ab.informatik.uni-tuebingen.de/download/megan6/old.html
pattern: "*.abin"
- mapping_type:
type: value
description: What type of accession to use for database construction.
pattern: "gi|ref|syn"
- mapping_type:
type: value
description: Which database the mapping file is derived from.
pattern: "eggnog|interpro2go|kegg|seed|taxonomy"
output:
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- index:
type: directory
description: Directory containing MALT database index directory
pattern: "malt_index/"
- log:
type: file
description: Log file from STD out of malt-build
pattern: "malt-build.log"
authors:
- "@jfy133"