mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
1f3f2b18bb
* Add new module macrel/contigs * removed trailing whitespace * removed whitespace * linting cleanup * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Updated the test.yml It didnt upload the updated version earlier for some reason :( * Update test.yml * Update test.yml * Update test.yml as generated by pytest * Update test.yml * updated the version issue * Update tests/modules/macrel/contigs/test.yml * Update modules/macrel/contigs/main.nf * Update modules/macrel/contigs/main.nf * Update pytest_modules.yml * Update pytest_modules.yml * Update modules/macrel/contigs/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Zipped all fasta outputs * Update main.nf * Update test.yml * Update test.yml * Update main.nf * Update main.nf (gzip -n) * Update test.yml * Update main.nf * Update main.nf * Update test.yml * Update tests/modules/macrel/contigs/test.yml * Update modules/macrel/contigs/main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: darcy220606 <ananhamido@hotmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
15 lines
382 B
Text
15 lines
382 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MACREL_CONTIGS } from '../../../../modules/macrel/contigs/main.nf'
|
|
|
|
workflow test_macrel_contigs {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['illumina']['test1_contigs_fa_gz'], checkIfExists: true)
|
|
]
|
|
|
|
MACREL_CONTIGS ( input )
|
|
}
|