mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
476 B
Text
16 lines
476 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PLASMIDID } from '../../../modules/plasmidid/main.nf' addParams ( options: ['args' : '-k 0.8'] )
|
|
|
|
workflow test_plasmidid {
|
|
|
|
contigs = [ [ id:'test' ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
|
|
PLASMIDID ( contigs, fasta )
|
|
}
|