mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
50 lines
1.3 KiB
YAML
50 lines
1.3 KiB
YAML
name: expansionhunter
|
|
description: write your description here
|
|
keywords:
|
|
- STR
|
|
- repeat_expansions
|
|
tools:
|
|
- expansionhunter:
|
|
description: A tool for estimating repeat sizes
|
|
homepage: https://github.com/Illumina/ExpansionHunter
|
|
documentation: https://github.com/Illumina/ExpansionHunter/blob/master/docs/01_Introduction.md
|
|
tool_dev_url: None
|
|
doi: "10.1093/bioinformatics/btz431"
|
|
licence: ["Apache-2.0"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
- fasta:
|
|
type: file
|
|
description: Reference genome
|
|
pattern: "*.{fa,fasta}"
|
|
- variant_catalog:
|
|
type: file
|
|
description: json file with repeat expansion sites to genotype
|
|
pattern: "*.{json}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', gender:'female' ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: VCF with repeat expansions
|
|
pattern: "*.{vcf}"
|
|
|
|
authors:
|
|
- "@jemten"
|