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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
950 B
YAML
36 lines
950 B
YAML
name: glnexus
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description: merge gVCF files and perform joint variant calling
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keywords:
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- merge
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- gvcf
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tools:
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- glnexus:
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description: scalable gVCF merging and joint variant calling for population sequencing projects.
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homepage: https://github.com/dnanexus-rnd/GLnexus
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documentation: https://github.com/dnanexus-rnd/GLnexus/wiki/Getting-Started
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tool_dev_url: None
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doi: https://doi.org/10.1101/343970
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licence: ["Apache-2.0"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- gvcfs:
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type: list
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description: Input genomic vcf files
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pattern: "*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bcf:
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type: file
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description: merged BCF file
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pattern: "*.bcf"
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authors:
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- "@ramprasadn"
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