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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: hisat2_build
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description: Builds HISAT2 index for reference genome
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keywords:
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- build
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- index
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- fasta
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- genome
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- reference
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tools:
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- hisat2:
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description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
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homepage: https://daehwankimlab.github.io/hisat2/
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documentation: https://daehwankimlab.github.io/hisat2/manual/
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doi: "10.1038/s41587-019-0201-4"
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licence: ["MIT"]
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input:
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- fasta:
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type: file
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description: Reference fasta file
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pattern: "*.{fa,fasta,fna}"
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- gtf:
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type: file
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description: Reference gtf annotation file
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pattern: "*.{gtf}"
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- splicesites:
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type: file
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description: Splices sites in gtf file
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pattern: "*.{txt}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- index:
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type: file
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description: HISAT2 genome index file
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pattern: "*.ht2"
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authors:
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- "@ntoda03"
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