mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
49 lines
1.2 KiB
YAML
49 lines
1.2 KiB
YAML
name: "genmod_score"
|
|
description: Score the variants of a vcf based on their annotation
|
|
keywords:
|
|
- score
|
|
- genmod
|
|
tools:
|
|
- "genmod":
|
|
description: "Annotate genetic inheritance models in variant files"
|
|
homepage: "https://github.com/Clinical-Genomics/genmod"
|
|
documentation: "https://github.com/Clinical-Genomics/genmod"
|
|
tool_dev_url: "https://github.com/moonso"
|
|
doi: ""
|
|
licence: "['MIT']"
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- input_vcf:
|
|
type: file
|
|
description: vcf file
|
|
pattern: "*.{vcf}"
|
|
- family_file:
|
|
type: file
|
|
description: ped file
|
|
pattern: "*.{ped}"
|
|
- score_config:
|
|
type: file
|
|
description: rank model config file
|
|
pattern: "*.{ini}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: Output VCF file
|
|
pattern: "*.{vcf}"
|
|
|
|
authors:
|
|
- "@ramprasadn"
|