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458f4396a6
* Added support for `task.ext.args` * Renamed the module since it can now process any sort of BED file
46 lines
1 KiB
YAML
Executable file
46 lines
1 KiB
YAML
Executable file
name: ucsc_bedtobigbed
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description: Convert file from bed to bigBed format
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keywords:
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- bed
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- bigbed
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tools:
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- ucsc:
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description: Convert file from bed to bigBed format
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homepage: None
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ["varies; see http://genome.ucsc.edu/license"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: bed file
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pattern: "*.{bed}"
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- sizes:
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type: file
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description: chromosome sizes file
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pattern: "*.{sizes}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bigbed:
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type: file
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description: bigBed file
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pattern: "*.{bigBed}"
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authors:
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- "@drpatelh"
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