Kevin Menden a90332906b add mergebamalignment (#259) ... * add mergebamalignment * fix test.yml * update to latest gatk4 version * Update software/gatk4/mergebamalignment/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/data/README.md Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gatk4/mergebamalignment/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gatk4/mergebamalignment/meta.yml * fixed unmapped/unaligned Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-03-17 15:56:56 +01:00
..
bedtointervallist	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
createsequencedictionary	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
mergebamalignment	add mergebamalignment (#259)	2021-03-17 15:56:56 +01:00
mergevcfs	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
revertsam	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
samtofastq	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
splitncigarreads	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
variantfiltration	added gatk4 variantfiltration (#265)	2021-03-17 09:42:35 +01:00