mirror of
https://github.com/MillironX/nf-core_modules.git
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967fb22ded
* Update versions * update checksums + remove variables as input for applyvqsr * sneak in removal of values and provide them via modules.config * update another checksum * more checksums * move vairable to config * remove controlfreec, wrong branch * add line break
32 lines
1.3 KiB
YAML
32 lines
1.3 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: d088422be886dc8507ff97fcc7dd968a
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- path: output/gatk4/versions.yml
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md5sum: d5c6455d8a77aecc63f87c795fc3443e
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- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: 4bfa18d651abd945e240b05e70107716
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- path: output/gatk4/versions.yml
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md5sum: cb4cb8a62e117b4adc643ae47883d53c
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- name: gatk4 applybqsr test_gatk4_applybqsr_cram
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.cram
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md5sum: 2e0bca197af4f043a4a85152e6edbe04
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- path: output/gatk4/versions.yml
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md5sum: 1efaa18be943bab4e4c54191d6eaa260
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