mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
2dba72dd14
* Update test for trimgalore * Fix picard markduplicate test * Fix tests for picard mergesamfiles * Fix checksum for markduplicates * Fix multiplemetrics and wgsmetrics * Fix checksum for mergesamfiles
28 lines
808 B
Text
28 lines
808 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { TRIMGALORE } from '../../../software/trimgalore/main.nf' addParams( options: [:] )
|
|
|
|
/*
|
|
* Test with single-end data
|
|
*/
|
|
workflow test_trimgalore_single_end {
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
TRIMGALORE ( input )
|
|
}
|
|
|
|
/*
|
|
* Test with paired-end data
|
|
*/
|
|
workflow test_trimgalore_paired_end {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
TRIMGALORE ( input )
|
|
}
|