mirror of
https://github.com/MillironX/nf-core_modules.git
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45985ff6f0
* Updated module to fit nf-core2.2dev0 templates * Updated module to fit nf-core2.2dev0 templates * Linked test files to nf-core/test-dataset branch:raredisease raw files * Change order of input: vcf and tbi with meta, ped without * Change order of input: vcf and tbi with meta, ped without/adapt test * Change order of input: vcf and tbi with meta, ped without/adapt test, bugfix * Indent and rename files * Update modules/peddy/main.nf Removed newline Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update pytest_modules.yml * Update main.nf * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
64 lines
1.5 KiB
YAML
64 lines
1.5 KiB
YAML
name: peddy
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description: Manipulation, validation and exploration of pedigrees
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keywords:
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- pedigrees
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- ped
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- family
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tools:
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- peddy:
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description: genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF
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homepage: https://github.com/brentp/peddy
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documentation: https://peddy.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/brentp/peddy
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doi: "https://doi.org/10.1016/j.ajhg.2017.01.017"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file
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pattern: "*.{vcf.gz}"
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.{ped,fam}"
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- vcf_tbi:
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type: file
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description: TBI file
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pattern: "*.{vcf.gz.tbi}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.peddy.{ped}"
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- html:
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type: file
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description: HTML file
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pattern: "*.{html}"
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- csv:
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type: file
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description: CSV file
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pattern: "*.{csv}"
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- png:
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type: file
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description: PNG file
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pattern: "*.{png}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@rannick"
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