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aa76c6d870
* add adapterremoval module * fix indentations * switch to process_medium * update docker tests * remove duplicated entry * fix line ending * Update software/adapterremoval/main.nf * Update software/adapterremoval/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.4 KiB
YAML
34 lines
1.4 KiB
YAML
- name: adapterremoval test_adapterremoval_single_end
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command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
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tags:
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- adapterremoval_single_end
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- adapterremoval
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files:
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- path: output/adapterremoval/test.log
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md5sum: 2fd3d5d703b63ba33a83021fccf25f77
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- path: output/adapterremoval/test.trimmed.fastq.gz
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md5sum: 62139afee94defad5b83bdd0b8475a1f
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- name: adapterremoval test_adapterremoval_paired_end
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command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
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tags:
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- adapterremoval_paired_end
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- adapterremoval
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files:
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- path: output/adapterremoval/test.pair2.trimmed.fastq.gz
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md5sum: f076a9f666235e01a3281f8c46c9d010
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- path: output/adapterremoval/test.log
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md5sum: bea86105aff4d27fe29c83e24498fefa
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- path: output/adapterremoval/test.pair1.trimmed.fastq.gz
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md5sum: f076a9f666235e01a3281f8c46c9d010
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- name: adapterremoval test_adapterremoval_paired_end_collapse
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command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
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tags:
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- adapterremoval_paired_end_collapse
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- adapterremoval
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files:
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- path: output/adapterremoval/test.log
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md5sum: 97cb97b3d03123ac88430768b2e36c59
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- path: output/adapterremoval/test.merged.fastq.gz
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md5sum: 50a4f9fdac6a24e211eb4dcf9f292bef
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