nf-core_modules/tests/modules/damageprofiler/test.yml
James A. Fellows Yates 90aef30f43
Set process label to process_single for modules with no task.cpus usage (#2076)
* Set process label to `process_single` for modules with no `task.cpus` usage

* Fix tests of 'borked' modules

* prettier

* More modules are single-threaded and can use process_single

* Adding process_single to hmmer/esl* modules

* Fix failing tests

* Prettier

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00

77 lines
4.1 KiB
YAML

- name: damageprofiler test_damageprofiler
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler -c ./tests/config/nextflow.config -c ./tests/modules/damageprofiler/nextflow.config
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/3pGtoA_freq.txt
md5sum: 56c165bbc9197e0b3d5bd3d464f9e235
- path: output/damageprofiler/test/3p_freq_misincorporations.txt
md5sum: 62e60259dd7fa2b54cdab6afc1adc9c4
- path: output/damageprofiler/test/5pCtoT_freq.txt
md5sum: 38b5d7c87ec2d8422bc5587095711c5f
- path: output/damageprofiler/test/5p_freq_misincorporations.txt
md5sum: 05e041ff47e7c6d08ede51f5c81a2464
- path: output/damageprofiler/test/DNA_comp_genome.txt
md5sum: e4d949c6aceddc2c2ef14de9c4aafde5
- path: output/damageprofiler/test/DNA_composition_sample.txt
md5sum: 16be9c91a06fa7defee376230b12862f
- path: output/damageprofiler/test/DamagePlot.pdf
- path: output/damageprofiler/test/DamagePlot_five_prime.svg
- path: output/damageprofiler/test/DamagePlot_three_prime.svg
- path: output/damageprofiler/test/DamageProfiler.log
- path: output/damageprofiler/test/Length_plot.pdf
- path: output/damageprofiler/test/Length_plot_combined_data.svg
- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
- path: output/damageprofiler/test/dmgprof.json
md5sum: a011a47edaadb3a07527c329a6492570
- path: output/damageprofiler/test/editDistance.txt
md5sum: 7590dac007633ee11025cc99ec9f009b
- path: output/damageprofiler/test/edit_distance.pdf
- path: output/damageprofiler/test/edit_distance.svg
- path: output/damageprofiler/test/lgdistribution.txt
md5sum: 583fd98094de3fb462b133daeaadcf52
- path: output/damageprofiler/test/misincorporation.txt
md5sum: 25119c0fcc8839fdbb3ed10922fb07f4
- name: damageprofiler test_damageprofiler_reference
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_reference -c ./tests/config/nextflow.config -c ./tests/modules/damageprofiler/nextflow.config
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/3pGtoA_freq.txt
md5sum: 56c165bbc9197e0b3d5bd3d464f9e235
- path: output/damageprofiler/test/3p_freq_misincorporations.txt
md5sum: 62e60259dd7fa2b54cdab6afc1adc9c4
- path: output/damageprofiler/test/5pCtoT_freq.txt
md5sum: 38b5d7c87ec2d8422bc5587095711c5f
- path: output/damageprofiler/test/5p_freq_misincorporations.txt
md5sum: 05e041ff47e7c6d08ede51f5c81a2464
- path: output/damageprofiler/test/DNA_comp_genome.txt
md5sum: e4d949c6aceddc2c2ef14de9c4aafde5
- path: output/damageprofiler/test/DNA_composition_sample.txt
md5sum: 16be9c91a06fa7defee376230b12862f
- path: output/damageprofiler/test/DamagePlot.pdf
- path: output/damageprofiler/test/DamagePlot_five_prime.svg
- path: output/damageprofiler/test/DamagePlot_three_prime.svg
- path: output/damageprofiler/test/DamageProfiler.log
- path: output/damageprofiler/test/Length_plot.pdf
- path: output/damageprofiler/test/Length_plot_combined_data.svg
- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
- path: output/damageprofiler/test/dmgprof.json
md5sum: a011a47edaadb3a07527c329a6492570
- path: output/damageprofiler/test/editDistance.txt
md5sum: 7590dac007633ee11025cc99ec9f009b
- path: output/damageprofiler/test/edit_distance.pdf
- path: output/damageprofiler/test/edit_distance.svg
- path: output/damageprofiler/test/lgdistribution.txt
md5sum: 583fd98094de3fb462b133daeaadcf52
- path: output/damageprofiler/test/misincorporation.txt
md5sum: 25119c0fcc8839fdbb3ed10922fb07f4
- name: damageprofiler test_damageprofiler_specieslist
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_specieslist -c ./tests/config/nextflow.config -c ./tests/modules/damageprofiler/nextflow.config
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/DamageProfiler.log
#contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'