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09acfad211
* added the module * updated test.yml * Update modules/gatk4/collectreadcounts/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * small fix * tests update * linting * tests update (again) Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
17 lines
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581 B
Text
17 lines
No EOL
581 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: 'test_gatk4_collectreadcounts_hdf5:GATK4_COLLECTREADCOUNTS'{
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ext.args = "--interval-merging-rule OVERLAPPING_ONLY"
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}
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withName: 'test_gatk4_collectreadcounts_tsv:GATK4_COLLECTREADCOUNTS' {
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ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
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}
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withName: 'test_gatk4_collectreadcounts_cram:GATK4_COLLECTREADCOUNTS' {
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ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
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}
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} |