mirror of
https://github.com/MillironX/nf-core_modules.git
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50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
21 lines
881 B
YAML
21 lines
881 B
YAML
- name: gatk4 applyvqsr test_gatk4_applyvqsr
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command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
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tags:
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- gatk4/applyvqsr
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- gatk4
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.tbi
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- path: output/gatk4/versions.yml
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md5sum: 984c932ee9a5683b18e22a369aa5c9e7
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- name: gatk4 applyvqsr test_gatk4_applyvqsr_allele_specific
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command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr_allele_specific -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
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tags:
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- gatk4/applyvqsr
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- gatk4
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.tbi
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- path: output/gatk4/versions.yml
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md5sum: 3b55f26c94c5f145f10ef4c5f83ec3cc
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