Francesco L abe025677c update to kraken2: breaking change - output channels renamed (#1525) ... * updated kraken2 module to include optional classification of each input reads, and make fastq outputs optional NB: this is a breaking change, because the output channels have been renamed as a consequence of changes * updated yml * pigz command made optional, in order to be executed only if fastq of classified/unclassified reads are saved * updated test yaml file for kraken2 * fixed TODOs and renamed variables and outputs * untar in conda cannot keep same md5sum of version, and therefore md5sum check removed * improved description of the options Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>		2022-04-21 14:33:59 +02:00
..
config	Antismashlite download databases (#1426)	2022-04-21 10:38:17 +02:00
modules	update to kraken2: breaking change - output channels renamed (#1525)	2022-04-21 14:33:59 +02:00
subworkflows/nf-core	feat(homer): Add groseq subworkflow (#1492)	2022-04-04 18:21:37 +00:00
test_versions_yml.py	Fix for version file output check when performing an expected error test (#1242)	2022-01-28 10:32:36 +01:00