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https://github.com/MillironX/nf-core_modules.git
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ae92159762
* Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>
12 lines
306 B
Text
12 lines
306 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMCOPY_GENERATEMAP } from '../../../../modules/hmmcopy/generatemap/main.nf'
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workflow test_hmmcopy_generatemap {
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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HMMCOPY_GENERATEMAP ( fasta )
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}
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