mirror of
https://github.com/MillironX/nf-core_modules.git
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60c65fb386
* Add ultra/index and ultra/align modules * Correct tag and prefix * Fix typos * Remove SAMTOOLS SORT from test * Update: Convert sam to bam * Add tag to docker image * Fix typo * Add args2 for samtools
29 lines
1.4 KiB
YAML
29 lines
1.4 KiB
YAML
- name: ultra index test_ultra_index
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command: nextflow run ./tests/modules/ultra/index -entry test_ultra_index -c ./tests/config/nextflow.config -c ./tests/modules/ultra/index/nextflow.config
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tags:
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- ultra
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- ultra/index
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files:
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- path: output/gffread/genome_sorted.gtf
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md5sum: c0b034860c679a354cd093109ed90437
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- path: output/ultra/all_splice_pairs_annotations.pickle
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- path: output/ultra/all_splice_sites_annotations.pickle
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- path: output/ultra/chr_to_id.pickle
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- path: output/ultra/database.db
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- path: output/ultra/exon_choordinates_to_id.pickle
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- path: output/ultra/flank_choordinates.pickle
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- path: output/ultra/gene_to_small_segments.pickle
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- path: output/ultra/id_to_chr.pickle
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- path: output/ultra/max_intron_chr.pickle
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- path: output/ultra/parts_to_segments.pickle
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- path: output/ultra/ref_exon_sequences.pickle
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- path: output/ultra/ref_flank_sequences.pickle
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- path: output/ultra/ref_part_sequences.pickle
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- path: output/ultra/ref_segment_sequences.pickle
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- path: output/ultra/refs_id_lengths.pickle
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- path: output/ultra/refs_lengths.pickle
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- path: output/ultra/segment_id_to_choordinates.pickle
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- path: output/ultra/segment_to_gene.pickle
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- path: output/ultra/segment_to_ref.pickle
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- path: output/ultra/splices_to_transcripts.pickle
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- path: output/ultra/transcripts_to_splices.pickle
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