mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
aa32a8a72e
* initiated files for calculate contamination * pushing local repo to remote * created script, filled in meta yml, created tests and test yml. local checks passing, needs repo side test data * added option and tests for outputting optional segmentation file * saving for test push * versions updated, test data added * Update main.nf * fixed versions info, should report correctly now * small update to main.nf outputs formatting * Apply suggestions from code review * Update test_data.config * Apply suggestions from code review Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
28 lines
1.3 KiB
YAML
28 lines
1.3 KiB
YAML
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
|
|
command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/calculatecontamination
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.contamination.table
|
|
md5sum: ff348a26dd09404239a7ed0da7d98874
|
|
|
|
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
|
|
command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/calculatecontamination
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.contamination.table
|
|
md5sum: ff348a26dd09404239a7ed0da7d98874
|
|
|
|
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
|
|
command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4/calculatecontamination
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.contamination.table
|
|
md5sum: ff348a26dd09404239a7ed0da7d98874
|
|
- path: output/gatk4/test.segmentation.table
|
|
md5sum: 478cb4f69ec001944b9cd0e7e4de01ef
|