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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
15 lines
541 B
Text
15 lines
541 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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params.save_mpileup = true
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include { IVAR_CONSENSUS } from '../../../../software/ivar/consensus/main.nf' addParams( [ options: [args2: '-aa -A -d 0 -Q 0'] ] )
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workflow test_ivar_consensus {
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input = [ [ id:'test'],
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.bam", checkIfExists: true)
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]
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fasta = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
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IVAR_CONSENSUS ( input, fasta )
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}
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