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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
15 lines
598 B
Text
15 lines
598 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { IVAR_TRIM } from '../../../../software/ivar/trim/main.nf' addParams([:])
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workflow test_ivar_trim {
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input = [ [ id:'test'],
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file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam.bai", checkIfExists: true)
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]
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bed = file("${launchDir}/tests/data/genomics/sarscov2/genome/bed/test.bed", checkIfExists: true)
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IVAR_TRIM ( input, bed_file )
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}
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