nf-core_modules/tests/software/samtools/stats/main.nf
Harshil Patel acb1a12a56
Re-organise all test data (#354)
* Re-organise all test data

* Fix ECLint

* Fix ECLint agaaainn

* Now is not the time EClint
2021-03-24 09:53:41 +00:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SAMTOOLS_STATS } from '../../../../software/samtools/stats/main.nf' addParams( options: [:] )
workflow test_samtools_stats {
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true),
file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam.bai", checkIfExists: true)
]
SAMTOOLS_STATS ( input )
}